Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VIRFFKIVTPILLSISLVACSSASGKTEKITAPIEKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDLTNNGEKTSHEELAKKLTQVEKNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYGDFGYEDAISSDEFSLSYLAAPSSKVWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGAMDFSLSGHIHTQNIRSAKSTDGKEITDIVTNALSVF---PHKYGNITYSAKNKNFTYQSQKLDMEAWAKAQGSTDENLLNFDQFDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTMGLNNMYFFAGTAPPKSDGMALWDSAPNSFLKDYVLSSSNPPKKSNDYYVSP |
1S3L Chain:A ((26-183)) | ---------------------------------------MKIGIMSDTHDHLP--------------------------NIRKAIEIFNDENVETVIHCGDFVSLF-------VIKEFENL---NANIIATYGNNDGERCKLK----------------EW---LK-------------------DI-NEENII--------------------------DDFISV------EIDDLKFFITHGHHQSVL---------------EMAIKSGLYDVVIYGHTHERVFEEV-----DDVLVINPGECCGYLTGIPTIGILDTEKK-------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1S3L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -98126 for 1272 contacts (-77.1/contact) +
2D Compatibility (PS) -16768 + (NN) -2917 + (LL) 14208
1D Compatibility (HY) -3600 + (ID) 1100
Total energy: -108303.0 ( -85.14 by residue)
QMean score : 0.366
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