Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRKGPVAKRDVLPDPIYNSKLVTRLINKMMVDGKRGKSQAILYSAFDIIAQETGKDPMEVFEQAMKNIMPLLEVKARRVGGANYQVPIEVRADRRSTLGLRWLVNYARLRGEKTMEVRVAREIMDAANNTGASVKKREDTHKMADANRAFAHYRW
1RSS Chain:A ((12-156))
-----------LQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEA-----HYRW
General information:
TITO was launched using:
RESULT:
Template:
1RSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39470 for 1026 contacts (-38.5/contact) +
2D Compatibility (PS) -15402 + (NN) -6582 + (LL) 784
1D Compatibility (HY) -13200 + (ID) 3650
Total energy: -77520.0 ( -75.56 by residue)
QMean score : 0.631
(partial model without unconserved sides chains):
PDB file :
Tito_1RSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RSS-query.scw
PDB file :
Tito_Scwrl_1RSS.pdb
: