Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVSKVAIASDHGGIELRKSIISYLESVGISYEEFGPETPESVDYPRLAITVSEKVVNQEVDRGILVCGTGIGMSIAANKVKGIRCALVGDTFSAHATREHNDTNVLALGARVIGPGLAEDIVKIWLETEYEGGRHANRVGQITAYEDSHA
4LFM Chain:B ((3-129))
-----IAIGNDHIVTMQKIEISNMLKDMGYTVIDEGTYDTHRTHYPIYGKKVAEDVADGRADLGIVMCGTGIGISTAADKNEGIRAAMCDDVTSAVYAREQLNANVLGIGGAVVGVHLIQDIVKAYLDATYK-------------------
General information:
TITO was launched using:
RESULT:
Template:
4LFM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105940 for 1121 contacts (-94.5/contact) +
2D Compatibility (PS) -13829 + (NN) -7170 + (LL) 1272
1D Compatibility (HY) -7600 + (ID) 2400
Total energy: -135667.0 ( -121.02 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_4LFM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LFM-query.scw
PDB file :
Tito_Scwrl_4LFM.pdb
: