Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKRFMQIWKPA---------VIGFLLLTLVCGVLYPGVVTVFAGVAFHDKANG----SIIEEKLADGTT--------------------------------GKVGSAEIGQTFTEPEYLIGRAASDG-----------VATNL-NPTSEEQKQLVEK------RIAWWHKLD-----PTNNRVIPMDLVTASASGVDPDISEAAAAYQVDRISRERGISTKEVKEIIAEHTSNRLLGFWGEPTVNVLQVNLALDRLKM---------------------- |
4LL1 Chain:A ((5-296)) | IKSFEVVFNDPEKVYGSGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWMQGSQQCKQTSEYLRYEDTLLLEDQPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGSVDYWVKAFLDRPSQPTQETKKNFEVVPDLMAPVSAKKEKKVSSMFIPDGRVSVSARIDRKGFCEGDEISIHADFENTSSRIVVPKA--AIVARHTYLANGQTKVLTQKLSSVRGNHIISGTCASWRGKSLRVQKINILRVEYSLLIYVSVPGSKKVILDLPLVIGS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LL1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -23686 for 1145 contacts (-20.7/contact) +
2D Compatibility (PS) -19777 + (NN) 6488 + (LL) 76
1D Compatibility (HY) -4000 + (ID) 1700
Total energy: -42599.0 ( -37.20 by residue)
QMean score : 0.188
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