Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VERVYNFSAGPAVLPVPVLEKVQRELLSYNGSGMSVMELSHRSELFQNILDDAESLIRELMEIPDNYKVLFLQGGASLQFDMVPMNLAN-GKKAAYVNTGSWAKKAISEAKKIQGVEVEVIASSEDRNFSYIPEIP--TVSSDVAYLHVTTNNTIEGTAMFDVPD--SAVPVVADMSSNILSSVYDVKKFGLIYAGAQKNIGPAGLTLVIVREDLIGQV-EGLPSMLDFKVQAENDSMYNTPPTFAIYVAKLVFEWIKEQGGVAGIEALNRKKAALLYDYIDQS-DFFSSPVEPSARSLTNVPFVTNSAEFDKAFVKEAEANGFENLKGHRSVGGMRASLYNAFPIEGVEALIAFMEKFANARKGGEVRV |
1BT4 Chain:A ((2-362)) | SERAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASS--EASNYMTLPKLQEIQLQDNAAYLHLTSNETIEGAQFKAFPDTG-SVPLIGDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRSRG------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1BT4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189084 for 2974 contacts (-63.6/contact) +
2D Compatibility (PS) -39454 + (NN) -24584 + (LL) 160
1D Compatibility (HY) -34000 + (ID) 8950
Total energy: -295912.0 ( -99.50 by residue)
QMean score : 0.538
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