Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVLTFLLCSLYFVSIPAISTEEPLTLSQNRRYALTQTVVDKEMYFDAIPERPTTKIEISSFQDEALTITGETLVPNTLLSIVSLTINSNGIPVFTLSNGQFIKASREAIFNDLVSKQQSVSLDYWLKPSFVTYEAPYTNGVSEVKNNLKPYSRVHLVEQAETEHGIYYKTDSGFWISVEDLSVADNRMAKVQEVLLEKYNKDKYGIYIKQLNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSGKLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVNNQYDSMFQTQVDTISGM------HW---------DMKKRQISPQAAGKMMEAIYYQN-------GDIVNYLSKTDFDNTRIPKNIP--VKVAHKIGDA-YDYKHDAAIVYA-EQ-PFIMIIFTDKSS------YDDITKIADDVYQVLK |
| 1BSG Chain:A ((4-265)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ERRLAGLERA--SGARLGVYAYDTGSGRTVAYRADELFPMCSVFKTLSSAAVLRDLDRNGEFLSRRILYTQDDVE-QADGA-PETGKP--QNLANGMTVEELCEVSITASDNCAANLMLRELGGP--AAVTRFVRSL-GDRVTRLDRWEPELNSAEPGRVTDTTSPRAITRTYGRLVLGDALNPRDRRLLTSWLLANTTSGDRFRAGLPDDWTLGDKTGAGRYGTNNDAGVTWPPGRAPIVLTVLTAKTEQDAARDDGLVADAARVLAETLG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1BSG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -78151 for 1978 contacts (-39.5/contact) +
2D Compatibility (PS) -24059 + (NN) -4655 + (LL) 13716
1D Compatibility (HY) -4800 + (ID) 1950
Total energy: -99899.0 ( -50.51 by residue)
QMean score : 0.397
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