Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MIYDHLLN-LTHYKDINPNLDLAIDYLLSHDLRNLDIGTYHISPEVILMVQSNQLSESFDHIFEYHKKYLDIHYVIEGHEVIKLGKGDKVEVE-EYLGDIGFIKCSEETSFDLRDNYIAFFFPEEAHQP------NGMGSLGNYVKKGVLKVLMA
4B4P Chain:A ((6-147))
SAQVTGTLLGTGKTNTTQMPAL-----YTWQHQIYNVNF----------IPSSSGTLTCQAGTILVWKNG-RETQYALECRVSIHHSSGSINESQWGQQSQVGFGTACGNKKCRFTGFEISLRIPPNAQTYPLSGDLKGSFSLTNKEVNWSASIYVP
General information:
TITO was launched using:
RESULT:
Template:
4B4P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42679 for 980 contacts (-43.5/contact) +
2D Compatibility (PS) -13438 + (NN) 1422 + (LL) 1016
1D Compatibility (HY) -400 + (ID) 1200
Total energy: -55279.0 ( -56.41 by residue)
QMean score : 0.271
(partial model without unconserved sides chains):
PDB file :
Tito_4B4P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4B4P-query.scw
PDB file :
Tito_Scwrl_4B4P.pdb
: