Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLLIMGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDPSCLIERLSGRIINRKTGETFHKVFNPP-----VDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK
4QBG Chain:B ((1-212))
MNIVLMGLPGAGKGTQAERIVAKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVRERLSKSD-CERGFLLDGFPRTVAQAEALEEILEEMGRKLEHVIHIEVRQEELMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVAKRLEVNMKQMAPLLAFYDSKEVLRNVNGQQDMEKVFKDLRELLQGLA
General information:
TITO was launched using:
RESULT:
Template:
4QBG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64404 for 1583 contacts (-40.7/contact) +
2D Compatibility (PS) -22211 + (NN) -8117 + (LL) 204
1D Compatibility (HY) -22000 + (ID) 5750
Total energy: -122278.0 ( -77.24 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_4QBG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QBG-query.scw
PDB file :
Tito_Scwrl_4QBG.pdb
: