Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVFNKLFKRRHSVSEEIKKDDLQEEVEATETEETVEEVIEEIPEKSELELANERADEFENKYLRAHAEMQNIQRRSSEERQQLQRYRSQDLAKAILPSLDNLERALAVEGLTDDVKKGLEMTRDSLIQALKEEGVEEVEV--DSFDHNFHMAVQTLPADDEHPADSIAEVFQKGYKLHERLLRPAMVVVYN---
1DKG Chain:A ((34-197))
----------------------------------AEQVDPRDEKVANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVA--MSAMVEDIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVE-SDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAKA
General information:
TITO was launched using:
RESULT:
Template:
1DKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9345 for 891 contacts (-10.5/contact) +
2D Compatibility (PS) -16658 + (NN) -5173 + (LL) 3308
1D Compatibility (HY) -8000 + (ID) 1950
Total energy: -37818.0 ( -42.44 by residue)
QMean score : 0.443
(partial model without unconserved sides chains):
PDB file :
Tito_1DKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DKG-query.scw
PDB file :
Tito_Scwrl_1DKG.pdb
: