Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTGILNSHLAKLADDLGHTDRVCIGDLGLPVPNGIPKIDLSLTSGIPSFQEVLDIYLENILVEKVILAEEIKEANPDQLSRLLAKLDNSVSIEYVSHDHLKQMTQDV--KAVIRTGENTPYSNIILQSGVII
3P12 Chain:C ((7-134))
----AVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF
General information:
TITO was launched using:
RESULT:
Template:
3P12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74223 for 958 contacts (-77.5/contact) +
2D Compatibility (PS) -13996 + (NN) -10814 + (LL) 388
1D Compatibility (HY) -10000 + (ID) 2650
Total energy: -111295.0 ( -116.17 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_3P12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P12-query.scw
PDB file :
Tito_Scwrl_3P12.pdb
: