Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLASGEIGEVISISSTTAYPNI---DHVTWFRELE-LGGGTVHFMAPYALSYLQYLFDATITHASGTAT-FP-KGQSDSQSKLLLQLSNGVLVDIFLTTRLNLPHEMIIYGTEGRLIIPHFWKT--THA------KLVRNDT--SART-----I--QVDMVSDFEKEAYHVSQMILEGQRVSHIMTPQLTLSGVKIIEDLYRSWGK |
| 3DB2 Chain:A ((3-343)) | YNPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNC-AGDATMEALLAREDVEMVIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSSRRLGALRKMKEMIDTKEIGEVSSIEAVFSNERGLELKKGNWRGEPATAPGGPLTQLGVHQIDNLQFLLGP-VARVFNFGKPMYTEVENITVNQTLLEFEDGKQAYLGTNWACPGVFSINVYGTKANLFYQLDFSWWSNSDVTDEHSTLIKREFAS---NRILRDVKVDFESVDHLRVEVEEVADVIRNGG--ETEIGAEASLRNLAVVLAAVKSVHE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DB2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -222283 for 2709 contacts (-82.1/contact) +
2D Compatibility (PS) -33569 + (NN) -7275 + (LL) 420
1D Compatibility (HY) -14800 + (ID) 2750
Total energy: -280257.0 ( -103.45 by residue)
QMean score : 0.513
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