Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTVFPKHFLWGGAVAANQVEGAFRTDGKGLSVQD-------VLPNGGLGDFTAKPTPDNLKLEAIDFYHNYKNDIKLFAEMGFKVFRTSIAWSRIFPNGDDSAPNEAGLQFYDNLFDELLKYNIEPLVTLSHYETPLHLAKTYNGWADRRLIAFFEKFAQTVMERYKDKVKYWLTFNE--VNSILHMPFTSGAIMTDKSQLSPQELYQAIHHELVASARVTKLGRSINPNFKIGCMILAMPAYPMTSDPRDVLAARQFEQH-NLLFSDIHVRGKYPTYIQSYFKNNGIKIKFEEGDEEVLAQNTVDFLSFSYYMSVTQAYDFENYQSGQGNILGG--LTNPHLTTSEWGWQIDPIGLRLVLNQYYERY-QIPLFIVENGLGAKDQLIETLDGDYTVEDDYRIDYMNQHLVQVAKAIEDGVEIMGYTSWGCIDCVSMSTAQLSKRYGLIYVDRNDDGTGSLQRYKKKSFGWYQKVIKTNGQSLFEHHNR |
| 4PTV Chain:B ((6-445)) | --IFPEDFIWGAATSSYQIEGAFNEDGKGESIWDRFSHTPGKIENGDTGDI------------ACDHYHLYREDIELMKEIGIRSYRFSTSWPRILPEGKGRV-NQKGLDFYKRLVDNLLKANIRPMITLYHWDLPQAL-QDKGGWTNRDTAKYFAEYARLMFEEFNGLVDLWVTHNEPWVVAFEGHAFGNHAPGTKDFKTA----LQVAHHLLLSHGMAVDIFREEDLPGEIGITLNLTPAYPAGDSEKDVKAASLLDDYINAWFLSPVFKGSYPEELHHIYEQNLGAFTTQPGDMDIISRD-IDFLGINYYSRMVV-----RHKPGD-NLFNAEVVKMEDRPSTEMGWEIYPQGLYDILVRVNKEYTDKPLYITENGAAFDDKLTE----EGKIHDEKRINYLGDHFKQAYKALKDGVPLRGYYVWSLMDNFEWAYG-YSKRFGLIYVDYENGN----RRFLKDSALWYREVIEKGQV-------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4PTV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -211004 for 3702 contacts (-57.0/contact) +
2D Compatibility (PS) -45150 + (NN) -10196 + (LL) 1628
1D Compatibility (HY) -26800 + (ID) 7500
Total energy: -299022.0 ( -80.77 by residue)
QMean score : 0.589
|
|
|