Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKQTKKEFILGLTIIITLTLLIMLIFLVMFNKSSNSKLKQTKDRRVLSTSTTRTSSSSHDQKIVEKSLEKKKMVMEQDMELMNAYRLYYDYAHLSLKEVVLAYMSEYGIEKNSVAFSYKNLKTGQRDAMNDTQAMTAGSTYKLPLNMLVVDAVVKGKLSMEERFDITETDY-EYIGEHNNYVAAFSGAMSIDDMQKYSLVYSENTPAYALAERIGGMDSAYSKFGRYGQSKGDIKNI---------QKNGNKVTTDYYIQVLDYLWKHR----KKYDSLITYLEEA-FPTDYYRALIPSDVVVAQKPGYV--REALNVGAIVK-EEV-PYIVAIYTAGLGGSTQEDSEINGVGLYQLEQLCFVINQWHRVNMN |
3DW0 Chain:A ((30-291)) | ------------------------------------------------------------------------------------------------AEPFAKLEQDF---GGSIGVYAMDTGSGATVSYRAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVPWSPISEKYL---TTGMTVAELSAAAVQYSDNAAANLLLKELGGPAGLTAFMRSIGDTTFRLDRWELELNSAIPGDARDTSSPRAVTESLQKLTLGSALAAPQRQQFVDWLKGNTTGNHRIRAAVPADWAVGDKTGTCGVYGTANDYAVVWPTGRAPIVLAVYTRAPNKDDKHSEAV----IAAAARLALEGLGVNGQQ-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DW0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -109682 for 2098 contacts (-52.3/contact) +
2D Compatibility (PS) -25191 + (NN) -1583 + (LL) 9392
1D Compatibility (HY) -5600 + (ID) 1750
Total energy: -134414.0 ( -64.07 by residue)
QMean score : 0.335
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