Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNKKKLHGFFNFVRWLLVVLLIIVGLALVFNKPIRNAFIAHQSNHYQISRVSKKTIEKNKKSKTSYDFSSVKSISTESILSAQTKSHNLPVIGGIAIPDVEINLPIFKGLGNTELSYGAGTMKENQIMGGQNNYALASHHVFGLTGSSKMLFSPLEHAKKGMKVYLTDKSKVYTYTITEISKVTPEHVEVIDDTPGKSQLTLVTCTDPEATERIIVHAELEKTGEFSTADESILKAFSKKYNQINL
3FN5 Chain:B ((25-186))
------------------------------------------------------------------------------------MAAQQLPVIGGIAIPELGINLPIFKGLGNTELIYGAGTMKEEQVMGGENNYSLASHHIFGITGSSQMLFSPLERAQNGMSIYLTDKEKIYEYIIKDVFTVAPERVDVIDDTAGLKEVTLVTCTDIEATERIIVKGELKTEYDFDKAPADVLKAFNHSYNQVST
General information:
TITO was launched using:
RESULT:
Template:
3FN5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94456 for 1270 contacts (-74.4/contact) +
2D Compatibility (PS) -17733 + (NN) -9216 + (LL) 6912
1D Compatibility (HY) -20800 + (ID) 5250
Total energy: -140543.0 ( -110.66 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_3FN5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FN5-query.scw
PDB file :
Tito_Scwrl_3FN5.pdb
: