Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIMDKSIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYFGELGRRGFGYDVKKLMNFFAEILNDHSTTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPSTEAQEVADILVKAGIKGILSFSPVHLTLPKDIIVQYVDLTSELQTLLYFMNQQR
3WGG Chain:B ((10-209))
---------AVIRRLPRYHRYLEELLKNDVKRISSRELSEKMGVTASQIRQDLNNFGGFGQQGYGYNVEELYNNLTKILGLDKTYNTIIIGAGNLGQAIANYTSFEKSGFNLKGIFDINPR-LFGLKIRD-VEVMDVETVEDFIARNKIDIGILCIPKDNAQYTADRLVRAGIKAIWNFLPIDLKVPDDVILENVHLSDSLFTVSYRLNEEE
General information:
TITO was launched using:
RESULT:
Template:
3WGG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156004 for 1423 contacts (-109.6/contact) +
2D Compatibility (PS) -21754 + (NN) -8897 + (LL) 460
1D Compatibility (HY) -18400 + (ID) 3200
Total energy: -207795.0 ( -146.03 by residue)
QMean score : 0.658
(partial model without unconserved sides chains):
PDB file :
Tito_3WGG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WGG-query.scw
PDB file :
Tito_Scwrl_3WGG.pdb
: