Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDELKKLAGVTAAKYVKNGMIVGLGTGSTAYFFVEEIGRRVKEEGLQVVGVTTSNRTTEQARGLGIPLKSADDIDVIDVTVDGADEVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLGAFKLPVEVVRYGSERLFRVFKSKGYCPSFRETEGDRFITDMGNYIIDLDLKKIEDPKQLANELDHTVGVVEHGLFNSMVNKVIVAGKNGLDILEK
4M8L Chain:B ((10-204))
-DELKKLAATEAAKSITTEITLGVGTGSTVGFLIEELVNY--RDKIKTV-VSSSEDSTRKLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLGNFPLPIEVIPMARSYIARQIVKLGGQPVYRE----QTITDNGNVILDVYNLKIDNPLKLETELNQITGVVTNGIFALKPADTVIMATKDSNIVVL
General information:
TITO was launched using:
RESULT:
Template:
4M8L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76283 for 1658 contacts (-46.0/contact) +
2D Compatibility (PS) -21089 + (NN) -7890 + (LL) 200
1D Compatibility (HY) -13200 + (ID) 4000
Total energy: -122262.0 ( -73.74 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_4M8L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M8L-query.scw
PDB file :
Tito_Scwrl_4M8L.pdb
: