Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTIYNFSAGPAVLPKPVLVKAQSELLNYQGSSMSVLEVSHRSKEFDDIIKGAERYLRDLMGIPDNYKVIFLQGGASLQFSMIPLNIARG-RKAYYHVAGSWGKKAYTEAVKLSK-TIPFEPILLASSEESVYDYIPEFDEKEIDPEAAYVHVTTNNTIEGTSLYDIPKTNGVPVIADMSSNILAVKYKVEDFAMIYAGAQKNIGPAGVTVVIIREDMINEEPT-LSSMLDYKIQSDASSLYNTPPAYSIYIAKLVFEWVKSLGGVDAMEKANREKSGLLYDYIDSS-EFYSNPVRDKKSRSLCNIPFITINKDLD-EKFVKEATERGFKNIKGHRSVGGMRASLYNAFPKQGVIELIDFMKTFEAENA |
| 1W23 Chain:A ((3-359)) | -QVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAA-----STK-ANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVG-HAEKGSRSLMNVTFNLRN-EELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKENA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1W23.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -201311 for 3052 contacts (-66.0/contact) +
2D Compatibility (PS) -38318 + (NN) -15557 + (LL) 676
1D Compatibility (HY) -34000 + (ID) 8200
Total energy: -296710.0 ( -97.22 by residue)
QMean score : 0.502
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