Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGLLILE
1RL4 Chain:B ((11-168))
------------------IVKYPDPILRRRSEEVT-NFDDNLKRVVRKMFDIMYESK------------GIGLSAPQVNISKRII------VWN-------------RIFINPSIVEQSLVKLKLI--EGCLSFP-GIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELI
General information:
TITO was launched using:
RESULT:
Template:
1RL4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45574 for 1124 contacts (-40.5/contact) +
2D Compatibility (PS) -15483 + (NN) -3031 + (LL) 2952
1D Compatibility (HY) -14800 + (ID) 2900
Total energy: -78836.0 ( -70.14 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_1RL4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RL4-query.scw
PDB file :
Tito_Scwrl_1RL4.pdb
: