Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGLFITFEGPEGAGKTTVLQEIKNILTAEGLQVMATREPGGIDIAEQIREVILNENNILMDPKTEALLYAAARRQHLVEKVKPALEQGFIVLCDRFIDSSLAYQGYARGLGIDEVLSINEFAIGDMMPHVTVYFSIDPEEGLKRIYANGSREKNRLDLEKLDFHTKVQEGYQELMKRFPERFHSVDAGQSKDLVVQDVLKVIDEALKKIQL
4GMD Chain:C ((5-190))
-TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPV-------------RLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAG-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4GMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73475 for 1322 contacts (-55.6/contact) +
2D Compatibility (PS) -19170 + (NN) -8798 + (LL) 3332
1D Compatibility (HY) -9200 + (ID) 3700
Total energy: -111011.0 ( -83.97 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_4GMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GMD-query.scw
PDB file :
Tito_Scwrl_4GMD.pdb
: