Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIEL-NQNKFNGLYGTGFVSGKKVLLVKPLTYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHLG-TSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEEAVDKSVKACEASLSKPFLEVMNEFNAKV
4DHW Chain:B ((6-192))
--LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQ-
General information:
TITO was launched using:
RESULT:
Template:
4DHW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107353 for 1527 contacts (-70.3/contact) +
2D Compatibility (PS) -19873 + (NN) -6475 + (LL) 576
1D Compatibility (HY) -11600 + (ID) 3250
Total energy: -147975.0 ( -96.91 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_4DHW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DHW-query.scw
PDB file :
Tito_Scwrl_4DHW.pdb
: