Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAGKITVVGLGAGDMDQLTIGIHKLLTKADTLYVRTKDH----------PLIEEL-EKETKNIRF--FDDIYEKHDQFEAVYEEIA----DILFEAA--RREDVVYAVPGHPFVAEKTVQLLTERQEK-ENVQVKVAGGQSFLDATFNVLQIDPIE---GFQFVDAGTLSA-DELELRHHLIICQVYDQMTASEVKLTLMEKLPDDYEVVIVTAAGSRGEEIRTVPLFELDRNVALNNLTSVYIPPIKEEKLLYHEFSTFRSIIRELRGPNGCPWDKKQTHQSLKQYMIEECYELLEAIDEEDTDHMIEELGDVLLQVLLHAQIGEDEGYFTIDDVIKGISEKMVRRHPHVFKDVKVQDENDVLANWEDIKKAEKNTSESSLLDSVPKTLPALSKAAKLQKKAAKVGFDWEDVSDIWEKVSEEMKEFSSEVSEAPHEHNLKAEFGDILFALVNVARFYKIEPEEALTMTNDKFRRRFSYIEETAKEEGVELADMSLEDMDKLWNEAKETERRS
3ND1 Chain:A ((20-246))HMIELSLIGIGTGNPRHITGQAVDAMNAADLILIPLKGADKSDLAGLRRQICAAHLTNPATKVIDFALPVR-----GVDDWHDAIAETWLSEITAHVPGLEGRVALLVWGDPSLYD-STLRIAERLKSRLPLTTKVIPGITAIQALCAAHAIPLNDIGAPVVITTGRQLRDHGWPAGTETVVAMLDGECS-F----QSLP---PDGLTIFWGACVAMPEEVLIRGPVAEVTD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 3ND1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92156 for 1334 contacts (-69.1/contact) +
2D Compatibility (PS) -20625 + (NN) -5446 + (LL) 22252
1D Compatibility (HY) -3600 + (ID) 1350
Total energy: -100925.0 ( -75.66 by residue)
QMean score : 0.462

(partial model without unconserved sides chains):
PDB file : Tito_3ND1.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3ND1-query.scw
PDB file : Tito_Scwrl_3ND1.pdb: