Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAGKITVVGLGAGDMDQLTIGIHKLLTKADTLYVRTKDH----------PLIEEL-EKETKNIRF--FDDIYEKHDQFEAVYEEIA----DILFEAA--RREDVVYAVPGHPFVAEKTVQLLTERQEK-ENVQVKVAGGQSFLDATFNVLQIDPIE---GFQFVDAGTLSA-DELELRHHLIICQVYDQMTASEVKLTLMEKLPDDYEVVIVTAAGSRGEEIRTVPLFELDRNVALNNLTSVYIPPIKEEKLLYHEFSTFRSIIRELRGPNGCPWDKKQTHQSLKQYMIEECYELLEAIDEEDTDHMIEELGDVLLQVLLHAQIGEDEGYFTIDDVIKGISEKMVRRHPHVFKDVKVQDENDVLANWEDIKKAEKNTSESSLLDSVPKTLPALSKAAKLQKKAAKVGFDWEDVSDIWEKVSEEMKEFSSEVSEAPHEHNLKAEFGDILFALVNVARFYKIEPEEALTMTNDKFRRRFSYIEETAKEEGVELADMSLEDMDKLWNEAKETERRS |
3ND1 Chain:A ((20-246)) | HMIELSLIGIGTGNPRHITGQAVDAMNAADLILIPLKGADKSDLAGLRRQICAAHLTNPATKVIDFALPVR-----GVDDWHDAIAETWLSEITAHVPGLEGRVALLVWGDPSLYD-STLRIAERLKSRLPLTTKVIPGITAIQALCAAHAIPLNDIGAPVVITTGRQLRDHGWPAGTETVVAMLDGECS-F----QSLP---PDGLTIFWGACVAMPEEVLIRGPVAEVTD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ND1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -92156 for 1334 contacts (-69.1/contact) +
2D Compatibility (PS) -20625 + (NN) -5446 + (LL) 22252
1D Compatibility (HY) -3600 + (ID) 1350
Total energy: -100925.0 ( -75.66 by residue)
QMean score : 0.462
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