Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MSYDVVIPAAGQGKRMKAGRNKLFIELKGDPVIIHTLRVFDSHRQCDKIILVINEQEREHFQQLLSDYPFQTSIELVAGGDERQHSVYKGLKAVKQEKIVLVHDGARPFIKHEQIDELIAEAEQTGA-AILAVPVKDTIKRVQDLQ--VSETIERSSLWAVQTPQAFRLSLLMKAHAEAERKGFLGTDDASLVEQMEGGSVRVVEGSYTNIKLTTPDDLTSAEAIMESESGNKHV
1INI Chain:A ((4-228))
THLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHP---QITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYC-GFHPQLVEGRADNIKVTRPEDLALAEFYLT--------
General information:
TITO was launched using:
RESULT:
Template:
1INI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113145 for 1806 contacts (-62.6/contact) +
2D Compatibility (PS) -23704 + (NN) -8296 + (LL) 504
1D Compatibility (HY) -13200 + (ID) 3900
Total energy: -161741.0 ( -89.56 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_1INI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1INI-query.scw
PDB file :
Tito_Scwrl_1INI.pdb
: