Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKGILGRKIGMTQVFAENG----------DLIPVTVIEAAPNVVLQKKTAENDGYEAIQLGFDDKR------EKLSNKPEK-------GHVA---------------------KAET-APKRFVKELRGVEMD----------AYEVGQEVKV-EIFSAGEIVDVTGVSKGKGFQGAIKRHGQSRGPMSHGS-RYHRRPGSMGPVDPNRVFKGKLLPGRMGGEQITVQNLEIVKVDA----------------ERNLLLIKGNVPGAKKSLITVKSAVKSK |
| 1VQ8 Chain:B ((38-318)) | GVQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPTVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAVRP- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VQ8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -12846 for 1278 contacts (-10.1/contact) +
2D Compatibility (PS) -21882 + (NN) -3506 + (LL) 64
1D Compatibility (HY) -4000 + (ID) 3450
Total energy: -45620.0 ( -35.70 by residue)
QMean score : 0.351
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