Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDSINNGHKESHDHRISNDAEMITDEKWQAIINNDAAYNNQFFYAVKSTGIFCKPSCKSRVPKKENVCIFPNTEQALRANFRPCKRCKPTNEKMPDSEWVDLITEYIDKNF-TEKLTLESLADICHGSPYHMHRTFKKIKGITLVEYIQQVRVHAAKKYLIQTNKAIGDIAICVGIANAPYFITLFKKKTGQTPARFRQMSKMEETYNGNK
3LSG Chain:A ((3-102))
---------------------------------------------------------------------------------------------------AKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQDYLLQKRMEKAKLLLLTTELKNYEIAEQVGFEDVNYFITKFKKYYQITPKQYR-------------
General information:
TITO was launched using:
RESULT:
Template:
3LSG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63294 for 664 contacts (-95.3/contact) +
2D Compatibility (PS) -10391 + (NN) -2612 + (LL) 5460
1D Compatibility (HY) -6400 + (ID) 1650
Total energy: -78887.0 ( -118.81 by residue)
QMean score : 0.725
(partial model without unconserved sides chains):
PDB file :
Tito_3LSG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LSG-query.scw
PDB file :
Tito_Scwrl_3LSG.pdb
: