Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIQVEENEHIQTLVYQLNKEGKSICGDSFFMKAD-DKELICAVADGLGSGSLANESSAAIKDLVENYAS------EDVESIIERCNQAMKN-----------KRGATASILKINFEQRQFTYCSVGNVRFILHSPSGESFYPLPISGY--------------------------------LS-------GKPQKYKTHTATY--EKGSKFIIHTDGLNVPDIRSHLK----KGQSVEEISNSLKMYT--TSRKDDLTYILGQLS
4DA1 Chain:A ((133-375))---------------------RKENEDRFDFAQLTDEVLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATVALLRD-GIELVVASVGDSRAILCRKG-KPMKLTIDHTPERKDEKERIKKCGGFVAWNQPHVNGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAHAVTEQAIQYGTEDNSTAVVVPF-


General information:
TITO was launched using:
RESULT:

Template: 4DA1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 996 -111930 -112.38 -639.60
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.68

3D Compatibility (PKB) : -112.38
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.351

(partial model without unconserved sides chains):
PDB file : Tito_4DA1.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4DA1-query.scw
PDB file : Tito_Scwrl_4DA1.pdb: