Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKT--NLIEALWYSTTLGSHRVS--ADLPLIRVGTDRAVISTI-VVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPEDLGLVRGDPADRRRYLDDLAIVRR----PAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVFDTLEVWDSRLAEHGAELVAARIDLV--NQLAPEVKKAYQL-LAPESRSASIGYRASMDVTGPSEQ--SDIDRQLLAARL-----LAALAARRD--AELERGVCLVGPHRDDLILRLGD----QPAKGFASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIPAGWDARRVHIDVRADDTGSMSVVLP |
| 4X4W Chain:A ((1-409)) | MFTMKLQSPEFQSLF--TEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINGTITARLHEENFEITTLRIDVTTDGAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSDATTRVCELLKYQ--------GEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQME-KDELLSYIKKTL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4X4W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -10197 for 2727 contacts (-3.7/contact) +
2D Compatibility (PS) -38795 + (NN) -6687 + (LL) 908
1D Compatibility (HY) -4000 + (ID) 3100
Total energy: -61871.0 ( -22.69 by residue)
QMean score : 0.108
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