Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MPKSKVRKKND--FTVSAV---SRTPMKVKVGPSSVWF---VSLFIGLMLIGLIWLMVFQLAAIGSQAPTALNWMAQLGPWNYAIAFAF---MITGLLLTMRWH---------------------
5C9F Chain:A ((1-132))
MYKWSTEVGEIIIARNRDGHFYINAFVNNVKIKFMVDTGASDIALTKEDAQKLGFDLTKLKYTRTYLTANGENKAAPITLNSVVIGKEFKNIKGHVGLGDLDISLLGMSLLERFKGFRIDKDLLILNYAAAL
General information:
TITO was launched using:
RESULT:
Template:
5C9F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77434 for 585 contacts (-132.4/contact) +
2D Compatibility (PS) -9262 + (NN) 6647 + (LL) 0
1D Compatibility (HY) -800 + (ID) 800
Total energy: -81649.0 ( -139.57 by residue)
QMean score : 0.192
(partial model without unconserved sides chains):
PDB file :
Tito_5C9F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5C9F-query.scw
PDB file :
Tito_Scwrl_5C9F.pdb
: