Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVYDAE---RFGARLVA------------------SPQHADALLVTGVVTHNMA---------GPLRKTLEATPRPRVVIACGDCALNRGVFADA--YGVVGAVGEVVP----VDVEIAGCPPTPAAIMAALRSVTGK
1H2A Chain:S ((55-216))
--------------------------------RRPSVVYLHNAECTGCSESVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHGFIAVVEGGIPTAANGIYGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYYLK-
General information:
TITO was launched using:
RESULT:
Template:
1H2A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85974 for 987 contacts (-87.1/contact) +
2D Compatibility (PS) -13369 + (NN) -3707 + (LL) 2468
1D Compatibility (HY) -5200 + (ID) 1450
Total energy: -107232.0 ( -108.64 by residue)
QMean score : 0.358
(partial model without unconserved sides chains):
PDB file :
Tito_1H2A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H2A-query.scw
PDB file :
Tito_Scwrl_1H2A.pdb
: