Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRVVRYLSVVVAITLMLTAESVSIATAAVPPLQPIPGVASVSPANGAVVGVAHPVVVTFTTPVTD---RRAVERSIRISTPHNTTGHFEWVASNVVRWVPHRYWPPHTRVSVGVQELTEGFETGDALIGVASISAHTFTVSRNGEVL----------RTMPASLGKPSRPTPIGSFHAMSKERTVVMDSRTIGIPLNSSDGYLLTAHYAVRVTWSGVYVHSAPWSVNSQGYANVSHGCINLSPDNAAWYFDAVTVGDPIEVVG
4K73 Chain:A ((36-274))
---------------------------------SYGFAVASVLPTRGQVVGVAHPVVVTFSAPITNPANRHAAERAVEVKSTPAMTGKFEWLDNDVVQWVPDRFWPAHSTVELSVGSLSSDFKTGPAVVGVASISQHTFTVSIDGVEEGPPRVHFGEDGVMPASMGRPEYPTPVGSYTVLSKERSVIMDSS----------GYRLSVDYAVRITSRGLYVHSAPWALPALGLENVSHGCISLSREDAEWYYNAVDIGDPVIVQE
General information:
TITO was launched using:
RESULT:
Template:
4K73.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118154 for 1591 contacts (-74.3/contact) +
2D Compatibility (PS) -22493 + (NN) -12002 + (LL) 3992
1D Compatibility (HY) -22000 + (ID) 5600
Total energy: -176257.0 ( -110.78 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_4K73.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K73-query.scw
PDB file :
Tito_Scwrl_4K73.pdb
: