Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHTQVHTARLVHTADLDSETRQDIRQMVTGAFAGD---F-----TET---DWEH-TL-GGMHALIWH-HGAIIAHAAVIQRRLIYRGNALRCGYVEGVAVRADWRGQRLVSALLDAVEQVMR----GAYQLGALSSSARARRLYASRGWLPWHGPTSVLAPTGPVRTPDDDGTVFVLPIDISLDTSAELMCDWRAGDVW
3DR6 Chain:A ((3-167))
----AMTIRFADKADC-----AAITEIYNHAVLHTAAIWNDRTVDTDNRLAWYEARQLLGYPVLVSEENGVVTGYASFGDWRSFD-G--FRYTVEHSVYVHPAHQGKGLGRKLLSRLIDEARRCGKHVMVAGIESQNAASIRLHHSLGFTVTAQMPQVGVKFGRW--LDL--TFMQLQLDE------------------
General information:
TITO was launched using:
RESULT:
Template:
3DR6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88429 for 991 contacts (-89.2/contact) +
2D Compatibility (PS) -16052 + (NN) -3644 + (LL) 1852
1D Compatibility (HY) -4400 + (ID) 1700
Total energy: -112373.0 ( -113.39 by residue)
QMean score : 0.373
(partial model without unconserved sides chains):
PDB file :
Tito_3DR6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DR6-query.scw
PDB file :
Tito_Scwrl_3DR6.pdb
: