Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRVLLTGAAGFIGSRVDAALRAAGHDVVGVDALLPAAHGPNPVLPPGCQRV--DVRDASALAPLLAGVDLVCHQAAMVGAGVNAADAPAYGGHNDFATTVLLAQMFAAGVRRLVLASSMVVYGQGRYDCPQHGPVDPLPRRRADLDNGVFEHRCPGCGEPVIWQLVDEDAPLRPRSLYAASKTAQEHYALAWSEA-SGGSVVALRYHNVYGPGMPRDTPYSGVAAIFRSAVEKGKPPKVFEDGGQMRDFVHVDDVAAANLAAVHLGEADRDGFTAVNVCSGRPISILQVATAICDARGGSMSPAITGHYRSGDVRHIVADPARAARVLGFR-AAVDPGEGLREFAFAPLR |
| 3VPS Chain:A ((8-301)) | HRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIP---PEGTGKFLEKPVLEL--EERDLSDVRLVYHLASHKSVPRSFKQPL-DYLDNVDSGRHLLALCTSVGVPKVVVGSTCEVYGQAD------------------------------------TLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERPD----ALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALAN---R--PLPSVVNFGSGQSLSVNDVIRILQATSPAA-EVARK-QPRPNEITEFRADTALQTRQIGERSGGIGIEEGIRLTLEW--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VPS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -162122 for 2525 contacts (-64.2/contact) +
2D Compatibility (PS) -31564 + (NN) -11056 + (LL) 1084
1D Compatibility (HY) -6000 + (ID) 4400
Total energy: -214058.0 ( -84.78 by residue)
QMean score : 0.484
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