Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGTPQPRALGPDALD--VSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKLSGAQLTCLHEAMASVLSDAVRR--SVGQGAAMLKGEK---RSGLRVHARTGLPCPVCGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK
3GQ4 Chain:A ((133-272))
---------LGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHHLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQ----------------
General information:
TITO was launched using:
RESULT:
Template:
3GQ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68868 for 1023 contacts (-67.3/contact) +
2D Compatibility (PS) -14236 + (NN) -6183 + (LL) 1372
1D Compatibility (HY) -5600 + (ID) 2350
Total energy: -95865.0 ( -93.71 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_3GQ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GQ4-query.scw
PDB file :
Tito_Scwrl_3GQ4.pdb
: