Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEPLRVPPSAPARLVVLASGTGSLLRSLLDAAVGDYPARVVAVGVDRECRAA--EIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHGVTVVGRTATMGRKVTIG
1MEN Chain:B ((16-197))
----------------VLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVAS-------------------
General information:
TITO was launched using:
RESULT:
Template:
1MEN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120417 for 1432 contacts (-84.1/contact) +
2D Compatibility (PS) -20375 + (NN) -11037 + (LL) 2220
1D Compatibility (HY) -11200 + (ID) 3350
Total energy: -164159.0 ( -114.64 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_1MEN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MEN-query.scw
PDB file :
Tito_Scwrl_1MEN.pdb
: