Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVHLTRIYTRTGDDGTTGLSDMSRVAKTDARLVAYADCDEANAAIGAALALGHP-DTQITDVLRQIQNDLFDAGADLSTPIVENPKHPPLRIAQSYIDRLEGWCDAYNAGLPALKSFVLPGGSPLSALLHVARTVVRRAERSAWAAVDAHPEGVSVLPAKYLNRLSDLLFILSRVANPDGDVLWRPGGDRTAS
2G2D Chain:A ((29-188))
----------------------------TDARLVAYADCDEANAAIGAALALGHPDT-QITDVLRQIQNDLFDAGADLSTPIVENPKHPPLRIAQSYIDRLEGWCDAYNAGLPALKSFVLPGGSPLSALLHVARTVVRRAERSAWAAVDAHPEGVSVLPAKYLNRLSDLLFILSRVANPDGDVLWRPGG-----
General information:
TITO was launched using:
RESULT:
Template:
2G2D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82846 for 1222 contacts (-67.8/contact) +
2D Compatibility (PS) -17759 + (NN) -14026 + (LL) 1848
1D Compatibility (HY) -20800 + (ID) 7900
Total energy: -141483.0 ( -115.78 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_2G2D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2G2D-query.scw
PDB file :
Tito_Scwrl_2G2D.pdb
: