Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVALIWLIAALVLV-GAEALTGDMF-LLMLGGGALAASV-SSWLLAWPMWADGAVFLLVSV-LLLVLVRPAVRRRLTQTKGV-QLG---IEALEGKKAVVLGRVARDGGQ----VKLDGQVWTARPLNDGDVFEPGDSVTVVQIDGATAVVFKDV
3F9U Chain:A ((28-172))
---EVHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMEL-----AVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNE---GNPLNKSYAYDEDISKYINFLQTGLENYRKEK
General information:
TITO was launched using:
RESULT:
Template:
3F9U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60796 for 884 contacts (-68.8/contact) +
2D Compatibility (PS) -13785 + (NN) -3645 + (LL) 1468
1D Compatibility (HY) -2000 + (ID) 1150
Total energy: -79908.0 ( -90.39 by residue)
QMean score : 0.111
(partial model without unconserved sides chains):
PDB file :
Tito_3F9U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F9U-query.scw
PDB file :
Tito_Scwrl_3F9U.pdb
: