Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS
2VXA Chain:K ((3-68))
--DHVYKIVELTGSSPNGIEEAVNNAIARAGETLRHLRWFEVVDTRGHIEGGRVNHWQVTVKVGFTLE--
General information:
TITO was launched using:
RESULT:
Template:
2VXA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38212 for 401 contacts (-95.3/contact) +
2D Compatibility (PS) -7499 + (NN) -3096 + (LL) 76
1D Compatibility (HY) -6800 + (ID) 1650
Total energy: -57181.0 ( -142.60 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_2VXA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VXA-query.scw
PDB file :
Tito_Scwrl_2VXA.pdb
: