Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------MVLSRTSTGRVILVPTQLRFDRWFLPLAVPLGLGPKNSELWV------GAGSLHVKMGWAFA-ADIPLTSITKAEATNARVYAAGVHFGFG-RWLVNGSRK--------GLVALTIDPPEQAKMWKKSMTVR------ELW------VSVTDPDALVTACTAK--
1E3T Chain:A ((29-203))
RSVKAGSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAKKMTEQIVQAMN
General information:
TITO was launched using:
RESULT:
Template:
1E3T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91165 for 1209 contacts (-75.4/contact) +
2D Compatibility (PS) -13283 + (NN) 3765 + (LL) 0
1D Compatibility (HY) -5600 + (ID) 1400
Total energy: -107683.0 ( -89.07 by residue)
QMean score : 0.112
(partial model without unconserved sides chains):
PDB file :
Tito_1E3T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1E3T-query.scw
PDB file :
Tito_Scwrl_1E3T.pdb
: