Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVVGAVLPELKLYGDPTFIVSTALATRDFQDVHHDRDKAVAQGSKDIFVNILTDTGLVQRYVTDWAGPS-ALIKSIGLRLGVPWYAYDTVTFSGEVTAVND-------GLITVKVVGRNT-LGDHVTATVELSMRDS
4FFU Chain:A ((34-169))
-YEQGHVRLTSGRTITETDFVVHAGHTGDFFPHHMDAEFAKTLPGGQRIAHGTMIFSIGVGLTASLINPVAFSYGYDRLRFVRPVHIGDTIRTRVTIAAKEDDPKRPGAGRVVERCEVINQRGEVVLAADHILIVER-
General information:
TITO was launched using:
RESULT:
Template:
4FFU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45677 for 877 contacts (-52.1/contact) +
2D Compatibility (PS) -13477 + (NN) 1006 + (LL) 180
1D Compatibility (HY) 3600 + (ID) 1150
Total energy: -55518.0 ( -63.30 by residue)
QMean score : 0.231
(partial model without unconserved sides chains):
PDB file :
Tito_4FFU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FFU-query.scw
PDB file :
Tito_Scwrl_4FFU.pdb
: