Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVREAGEVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSG----VVDTVVVAVPADRT--DEARQILGHRAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVL--PLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVRG
4NAL Chain:A ((5-224))
-------VSVILLAGG---------PKQYIPLLGQPI---ALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPGKERQDSVYSGLQEIDVNSE--LVCIHDSARPLVNTEDVEKV---LKDGSAVGAAVLGVPAKATIKEVNSDSLVVKT----TLWEMQTPQVIKPELLKKGFELVKSE--GLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL--
General information:
TITO was launched using:
RESULT:
Template:
4NAL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138263 for 1499 contacts (-92.2/contact) +
2D Compatibility (PS) -20989 + (NN) -4526 + (LL) 2200
1D Compatibility (HY) -14000 + (ID) 3500
Total energy: -179078.0 ( -119.46 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_4NAL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NAL-query.scw
PDB file :
Tito_Scwrl_4NAL.pdb
: