Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDLTLHYLYDPLCGWCYGASPLLAAACEV--TGLDVRLHGGGMMTDANRQPVGAGLRHYVMPHDLRIAQLTGQPFGKDYFDGLLRDTSAVFDSAPPTAAVLAAEALDGLGAAMLARIQRAHYVEGRRIAERPVLLELGAELGLG-EGFAEAFDACSGEPLRAHFADSRRLMNRLGAAGFPTFALERDGRLQVLDTGRYLGQPDDWRAFLETQLRLAGGSGAVGGAAAPLCRIDGCA
3H93 Chain:A ((25-188))
-GKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGI----------------------------------------------WNVHGQMFLTLESM-GVEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYN---SFAIKGQMEKAKKLAMAYQVTGVPTMVVNGK---Y-RFDIGSAGGPEETLKLADYLIEKERAAAKK--------------
General information:
TITO was launched using:
RESULT:
Template:
3H93.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98880 for 1217 contacts (-81.2/contact) +
2D Compatibility (PS) -17924 + (NN) -9583 + (LL) 3492
1D Compatibility (HY) -4400 + (ID) 1100
Total energy: -128395.0 ( -105.50 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_3H93.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3H93-query.scw
PDB file :
Tito_Scwrl_3H93.pdb
: