Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------------------------------------------------------------------------------------------------------MKALKTLFIATAL---LGSAAGVQAADNFVGLTWGETSNNIQKSKSLNRNLNSPNLDKVIDNTG------TWGIRAGQQFEQGRYYATYENISDTSSGNKLRQQNLLGSYDAFLPIGDNNTKLFGGATLGLVKLEQDGKGFKRDSDVGYAAGLQAGILQELSKNASIEGGYRYLRTNASTEMTPHGGNKLGSLDLH----SSSQFYLGANYKF---------------------------------------------------------------------------------------------------------------------------------- |
| 4OJD Chain:H ((14-490)) | RAEPPHCSKTPIVRAQTSQNAMGMQMQFSIGLHTAVCFRLYSLLHTIRLEKLEHHHPITQRYTFGIPEVHASCICECDATSSTCTAESHQFTACPEDETSSCYRTFFPNQTPIGCSEDDIPKLCCDVRFKPYKNMTFLAVKLEQPTTYATFVYAAYDFVNGYWVEKDKTKIRSQ-----LDGGTQDRHLDQKRRISLAVTAGARASHQLETGMYFSRTSNGGETEE---LRMQPLN-------EITDNNFD-----RLGWYRMDDSGH-----FHVNNGVVKMEEIHKAKVKNCKEQ---TYKSILSANHYMPGHFNLTRPLEVIKPWIQSARIFDSSLRQAVVTHAEGTNLQISIHLESQNLVFFHNASRIRDFSGSIIVDSKSNRLFNLTVYEASGKIDGSVKMSTGFGSDTIHTFTAYVSDLHASNRSMIIPLPAIVGQGARAICLRADSMADIDKICHVIEYFESPLF |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OJD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 15649 for 945 contacts (16.6/contact) +
2D Compatibility (PS) -17779 + (NN) 989 + (LL) 72
1D Compatibility (HY) -1600 + (ID) 2250
Total energy: -4919.0 ( -5.21 by residue)
QMean score : 0.142
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