Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDPAEVPTASPLLETVGLACERDWRMLFERLDLRLAAGEMLQVVGPNGSGKTSLLRLLSGLMQPTAGEVRLNGRPLAEQRGELARSLLWIGHAAGIKGLLSAEENLTWLCALHQPA---SREAIWQALADVGLRGFEDVPCHTLSAGQQRRVALARLYLDAPPLWILDEPFTALDKQGVAQLETHLAGHCQ-RGGMVVLTTHHSLQQVPAGYRELDLGALKAASGATVEPALGDPA
3RLF Chain:A ((2-226))
-----------ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT-PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA
General information:
TITO was launched using:
RESULT:
Template:
3RLF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135026 for 1762 contacts (-76.6/contact) +
2D Compatibility (PS) -23870 + (NN) -11573 + (LL) 532
1D Compatibility (HY) -12800 + (ID) 2450
Total energy: -185187.0 ( -105.10 by residue)
QMean score : 0.417
(partial model without unconserved sides chains):
PDB file :
Tito_3RLF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RLF-query.scw
PDB file :
Tito_Scwrl_3RLF.pdb
: