Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQHKRSRAMASPRSPFLFVLLALAVGGTANAHDDGLPAFRYSAELLGQLQLPSVALPLNDDLFLYGRDAEAFDLEAYLALNAPALRDKSEYLEHWSGYYSINPKVLLTLMVMQSGPLGAPDERALAAPLGRLSAKRGFDAQVRDVLQQLSRRYYGFEEYQLRQAAAR-KAVGEDGLNAASAALLGL-LREGAKVSAVQGGNPLGAYAQTFQRLFGTPAAELLQPSNRVARQLQAKAALAPPSNLMQLPWRQGYS-WQPNGAHSNTGSGYPY-SSFDASYDWPRWGSATYSVVAA-HAGTVRVLSR-----CQVRVTHPSGWATNYYHMDQI-QVSNGQQVSADTKLGVY-AGNINTALCEGGSSTGPHLHFSLLYNGAFVSLQ---GASFGPYRINVGTSNYDNDCRRYYFYNQSAGTTHCAFRPLYNPGLAL |
| 3NYY Chain:A ((1-251)) | ---------------------------------------------------------------------------------------------------------------------------------------------GVSGFQRLQKPVVSQPDFRRQPVSETMQVYLKQAADPGRDVGLYWMATDFENRRFPGKVSPSGFQKLYRQWRNQTGWDAYVQSCRAIWNDVKYFPIPQSLDDTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPG---------YYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLG-YMGDSGYGEEGTTGEFP-VHLHLGIYLKEGTEEISVNPYPVLRYAENARIKCVYS------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NYY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -42043 for 1774 contacts (-23.7/contact) +
2D Compatibility (PS) -25065 + (NN) -7785 + (LL) 10648
1D Compatibility (HY) 400 + (ID) 1550
Total energy: -65395.0 ( -36.86 by residue)
QMean score : 0.403
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