Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLHIDSSILGDASASRQLSAELVQAWRQNEDGLDVTYRDLAADAVAHFSALTLAAGSTP-AELRDAALKHEVAVGEEVLEEFLAADVVVIGAPMYNFTISSQLKAWIDRIAVAGKTFRYTENG---PVGLAGDKKVVIVSTAGGVHAGQPTGAAH---EGYLRTVLGFFGITDIEVVRAEGLAYGEEPRTQAIAAARRQIAGQFAAA
3LT5 Chain:B ((3-186))
-RILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFV---QYRPL-LRGKRALIVTSRGGHGFGPGGENQAMNHADPWLRTALGFIGIDEVTVVAAEGEESSCDEAEQRLLALARSA-------
General information:
TITO was launched using:
RESULT:
Template:
3LT5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87176 for 1289 contacts (-67.6/contact) +
2D Compatibility (PS) -18821 + (NN) -9563 + (LL) 196
1D Compatibility (HY) -14800 + (ID) 2850
Total energy: -133014.0 ( -103.19 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_3LT5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LT5-query.scw
PDB file :
Tito_Scwrl_3LT5.pdb
: