Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQTNLDDTLDVLNDLLQTSKDGEAGFHACAEDLRDPQLKAAMLEQSRDCAAAADELERIVLELGGKPKDSTSFAGDLHRRWVDLKSLVTGKDEEAVLNECERGEDVAKHRYQAALEKSLPAEIHQVIERQYQGVLRHHDRVRALRDARA
4ETR Chain:A ((5-150))
----NLDDTLDVLNDLLQTSKDGEAGFHACAEDLRDPQLKAAMLEQSRDCAAAADELERIVLELGGKP-------------------------EEAVLNECERGEDVAKHRYQAALEKSLPAEIHQVIERQYQGVLRHHDRVRALRDARA
General information:
TITO was launched using:
RESULT:
Template:
4ETR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32554 for 875 contacts (-37.2/contact) +
2D Compatibility (PS) -13693 + (NN) -10112 + (LL) 1452
1D Compatibility (HY) -13200 + (ID) 6050
Total energy: -74157.0 ( -84.75 by residue)
QMean score : 0.775
(partial model without unconserved sides chains):
PDB file :
Tito_4ETR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ETR-query.scw
PDB file :
Tito_Scwrl_4ETR.pdb
: