Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNTYFDIPHRLVGKALYESYYDHFGQMDILSDGSLYLIYRRATEHVGGSDGRVVFSKLEGGIWSAPTIVAQAGGQDFRDVAGGTMPSGRIVAASTVYETGEVKVYVSDDSGVTWVHKFTLARGG-A---DYNFAHGKSFQV--GARYVIPLYAATGVNYELKWLESSDGGETWGEGSTIYSGNTPYNETSYLPVGDGVILAVARVGSGAGGALRQFISLDDGGTWTDQGNVT-AQN---GDSTD---ILVAPSLSYIYSEGGTPHVVLLYTNRTTHFCY----YRTILLAKAVAGSSGWTERVPVYSAPAASGYTSQVVLGGRRILGNLFRETSSTTSGAYQFEVYLGGVPDFESDWFSVSSNSLYTLSHGLQRSPRRVVVEFARSSSPSTWNIVMPSYFNDGGHKGSGAQVEVGSLNIRLGTGAAVWGTGYFGGIDNSATTRFATGYYRVRAWI |
| 2JKB Chain:A ((449-662)) | ------------------------------------------------------------------------------------------------------AMTTSQNRGESWEQFKLLPPFLGEKHNGTYLCPGQGLALKSSNRLIFATYTS----GELTYLISDDSGQTWKKSSASIPFKNATAEAQMVELRDGVIRTFFRTTTG---KIAYMTSRDSGETWSKVSYIDGIQQTSYGTQVSAIKYSQLIDG--------KEAVILSTPNSRSGRKGGQLVVGLVNKEDD--S-IDWKYHYDIDLPSYGYAYSAITELPNHHIGVLFEKYDS------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2JKB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -49117 for 1406 contacts (-34.9/contact) +
2D Compatibility (PS) -21721 + (NN) -11205 + (LL) 10932
1D Compatibility (HY) -3600 + (ID) 1900
Total energy: -76611.0 ( -54.49 by residue)
QMean score : 0.290
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