Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVILLGAPGAGKGTQARFITEKFGIPQISTGDMLRAAVKAGSPLGQQVKGVMDSGGLVSDDIIIALIKERITEADCAKGFLFDGFPRTIPQAEALKDA----GVTIDHVVEIAVDDEEIVSRIAGRRVHPASGRVYHTEHNPPKVAGKDDVTGEELIQREDDKEETVRHRLSVYHSQTKPLVDFYQKLSAAEGTPKYHSIAGVGSVEQITAKVLSALS
4MKG Chain:A ((1-186))
MNIVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLAFY---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4MKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63817 for 1359 contacts (-47.0/contact) +
2D Compatibility (PS) -19663 + (NN) -9254 + (LL) 2316
1D Compatibility (HY) -16000 + (ID) 4900
Total energy: -111318.0 ( -81.91 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_4MKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKG-query.scw
PDB file :
Tito_Scwrl_4MKG.pdb
: