Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MNPLYRAAIHQLFLALDLPTPN-DEESVLSLQVGP--HLCHLAEHPTDHLLMFTRLEGQGD------ATANEQNLFSQDPCKPILGRDPESGERLLWNRQPLQLLDRAQIHHQLEQLVAAAEELR-------
3KXY Chain:A ((1-133))
MDLTSKVNRLLAEFAGRIGLPSLSLDEEGMASLLFDEQVGVTLLLLAERERLLLEADVVGIDVLGEGIFRQLASFNRHWHRF-DLHFGFDELTGKVQLYAQILAAQLTLECFEATLANLLDHAEFWQRLLPCAS
General information:
TITO was launched using:
RESULT:
Template:
3KXY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41990 for 742 contacts (-56.6/contact) +
2D Compatibility (PS) -12878 + (NN) -9902 + (LL) 56
1D Compatibility (HY) -4800 + (ID) 1050
Total energy: -70564.0 ( -95.10 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_3KXY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KXY-query.scw
PDB file :
Tito_Scwrl_3KXY.pdb
: