Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLPSGDQPAEPGNA
4J5Y Chain:D ((5-72))
----HSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLPS----------
General information:
TITO was launched using:
RESULT:
Template:
4J5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41253 for 422 contacts (-97.8/contact) +
2D Compatibility (PS) -7166 + (NN) 89 + (LL) -196
1D Compatibility (HY) -11200 + (ID) 3400
Total energy: -63126.0 ( -149.59 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_4J5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J5Y-query.scw
PDB file :
Tito_Scwrl_4J5Y.pdb
: