Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MINKDSLTHHISQQFNAELEDVRSHLLAMGGLVEKQVNDAVNALIDADSGLAQQVREIDDQINQMERNIDEECVRILARRQPAASDLRLIISISKSVIDLERIGDEASKVARRAIQLCEEGESPRGYVEVRHIGSQVQKMVQEALDAFARFDADLALSVAQYDKTVDREYKTALRELVTYMMEDPRAISRVLNIIWALRSLERIGDHARNIAELVIYLVRGTDVRHIGLTRMKEEVENNRGE
1SUM Chain:B ((2-225))
-----------NRLLNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTAGIRVAELIENIADKCHDIAKNVLEL-MEEPPLKPLEDIPAMANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYEKVREELLLYMMESPKYVKRALLLLEIAGNIEIIADYATNIVEVSVYMVQGEAYKCYHDELLLFKK------
General information:
TITO was launched using:
RESULT:
Template:
1SUM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90208 for 1810 contacts (-49.8/contact) +
2D Compatibility (PS) -24353 + (NN) -13535 + (LL) 844
1D Compatibility (HY) -16400 + (ID) 2700
Total energy: -146352.0 ( -80.86 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_1SUM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SUM-query.scw
PDB file :
Tito_Scwrl_1SUM.pdb
: